CpG_Me: A Unix based pipeline for the pre-processing, alignment, and quality control and quality assurance (QC/QA) of whole genome bisulfite sequencing (WGBS) data.
DMRichR: An R package and accompanying executable R script for the statistical inference and downstream analysis of differentially methylated regions (DMRs) from aligned WGBS data.
Example DMR: Each dot represents the methylation level of an individual CpG in a single sample, where the size of the dot is representative of coverage. The lines represent smoothed methylation levels for each sample, either control (blue) or DS (red). Genic and CpG annotations are shown below the plot.